pySBOL2
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  • Introduction
  • Installation
  • Getting Started with SBOL
  • Biological Parts Repositories
  • Computer-aided Design for Synthetic Biology
  • SBOL Extensions
  • API Reference
pySBOL2
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  • Welcome to pySBOL2’s documentation!
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Welcome to pySBOL2’s documentation!¶

pySBOL2 is a Python module for reading, writing, and constructing genetic designs according to the standardized specifications of the Synthetic Biology Open Language (SBOL).

  • Introduction
  • Installation
    • Install the current release
    • Install the latest from GitHub
    • For developers
    • Installing on macOS
    • Using PyPy
  • Getting Started with SBOL
    • Creating an SBOL Document
    • Creating SBOL Data Objects
    • Using Ontology Terms for Attribute Values
    • Adding and Getting Objects from a Document
    • Getting, Setting, and Editing Attributes
    • Creating, Adding and Getting Child Objects
    • Creating and Editing Reference Properties
    • Iterating and Indexing List Properties
    • Searching a Document
    • Copying Documents and Objects
    • Converting To and From Other Sequence Formats
    • Creating Biological Designs
  • Biological Parts Repositories
    • Re-using Genetic Parts From Online Repositories
    • Logging in to Part Repos
    • Searching Part Repos
    • Submitting Designs to a Repo
  • Computer-aided Design for Synthetic Biology
    • Design Abstraction
    • Hierarchical DNA Assembly
    • Editing a Primary Structure
    • Sequence Assembly
    • Genome Integration
    • Full Example Code
  • SBOL Extensions
    • Defining Extension Properties
    • Extension Classes
  • API Reference
    • sbol2

Indices and tables¶

  • Index

  • Module Index

  • Search Page

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