sbol2.location

Module Contents

Classes

Location	The Location class specifies the strand orientation of a Component.
Range	A Range object specifies a region via discrete,
Cut	The Cut class specifies a location between
GenericLocation	the GenericLocation class is included as a starting point
OwnedLocation	Member properties of all SBOL objects are defined

class sbol2.location.Location(uri=URIRef('example'), orientation=SBOL_ORIENTATION_INLINE, *, type_uri=SBOL_LOCATION, version=VERSION_STRING)

Bases: sbol2.identified.Identified

The Location class specifies the strand orientation of a Component.

class sbol2.location.Range(uri=URIRef('example'), start=1, end=2, *, type_uri=SBOL_RANGE, version=VERSION_STRING)

Bases: Location

A Range object specifies a region via discrete, inclusive start and end positions that correspond to indices for characters in the elements String of a Sequence. Note that the index of the first location is 1, as is typical practice in biology, rather than 0, as is typical practice in computer science.

precedes(self, comparand)

follows(self, comparand)

adjoins(self, comparand)

contains(self, comparand)

overlaps(self, comparand)

length(self)

class sbol2.location.Cut(uri=URIRef('example'), at=0, *, type_uri=SBOL_CUT, version=VERSION_STRING)

Bases: Location

The Cut class specifies a location between two coordinates of a Sequence’s elements.

class sbol2.location.GenericLocation(uri=URIRef('example'), *, type_uri=SBOL_GENERIC_LOCATION, version=VERSION_STRING)

Bases: Location

the GenericLocation class is included as a starting point for specifying regions on Sequence objects with encoding properties other than IUPAC and potentially nonlinear structure. This class can also be used to set the orientation of a SequenceAnnotation and any associated Component when their parent ComponentDefinition is a partial design that lacks a Sequence.

class sbol2.location.OwnedLocation(property_owner, sbol_uri, lower_bound, upper_bound, validation_rules=None, first_object=None)

Bases: sbol2.property.OwnedObject

Member properties of all SBOL objects are defined using a Property object.

The Property class provides a generic interface for accessing SBOL objects. At a low level, the Property class converts SBOL data structures into RDF triples.

createRange(self, uri=URIRef('example'))

createCut(self, uri=URIRef('example'))

createGenericLocation(self, uri=URIRef('example'))

getRange(self, uri='')

getCut(self, uri='')